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<article xml:lang="ru" article-type="research-article" dtd-version="1.4">
  <front>
    <journal-meta>
      <journal-id journal-id-type="publisher-id">biolchem</journal-id>
      <journal-title-group>
        <journal-title xml:lang="ru">Ученые записки Крымского федерального университета имени В.И. Вернадского. Биология. Химия</journal-title>
        <trans-title-group xml:lang="en">
          <trans-title>Scientific Notes of V.I. Vernadsky Crimean Federal University. Biology. Chemistry</trans-title>
        </trans-title-group>
      </journal-title-group>
      <issn pub-type="ppub">2413-1725</issn>
      <publisher>
        <publisher-name xml:lang="ru">Крымского федерального университета имени В.И. Вернадского</publisher-name>
        <publisher-name xml:lang="en">V.I. Vernadsky Crimean Federal University</publisher-name>
      </publisher>
    </journal-meta>
    <article-meta>
      <article-id pub-id-type="publisher-id">7640</article-id>
      <article-categories>
        <subj-group xml:lang="en">
          <subject>1</subject>
        </subj-group>
        <subj-group xml:lang="ru">
          <subject>1</subject>
        </subj-group>
      </article-categories>
      <title-group>
        <article-title xml:lang="ru">РОЛЬ РЕСПИРАТОРНОГО МИКРОБИОМА В ПАТОГЕНЕЗЕ ВИРУСНЫХ ЗАБОЛЕВАНИЙ ДЫХАТЕЛЬНЫХ ПУТЕЙ</article-title>
        <trans-title-group xml:lang="en">
          <trans-title>THE ROLE OF RESPIRATORY MICROBIOME IN THE PATHOGENESIS OF VIRAL RESPIRATORY DISEASES</trans-title>
        </trans-title-group>
      </title-group>
      <contrib-group content-type="author">
        <contrib contrib-type="author">
          <name-alternatives>
            <name xml:lang="ru">
              <surname>Волкова</surname>
              <given-names>К. Е.</given-names>
            </name>
            <name xml:lang="en">
              <surname>Volkova</surname>
              <given-names>K. E.</given-names>
            </name>
          </name-alternatives>
          <xref ref-type="aff" rid="aff-1"/>
        </contrib>
        <contrib contrib-type="author">
          <name-alternatives>
            <name xml:lang="ru">
              <surname>Сорокин</surname>
              <given-names>О. В.</given-names>
            </name>
            <name xml:lang="en">
              <surname>Sorokin</surname>
              <given-names>O. V.</given-names>
            </name>
          </name-alternatives>
          <xref ref-type="aff" rid="aff-2"/>
        </contrib>
        <contrib contrib-type="author">
          <name-alternatives>
            <name xml:lang="ru">
              <surname>Нефедова</surname>
              <given-names>Ж. В.</given-names>
            </name>
            <name xml:lang="en">
              <surname>Nefedova</surname>
              <given-names>Zh. V.</given-names>
            </name>
          </name-alternatives>
          <xref ref-type="aff" rid="aff-3"/>
        </contrib>
        <contrib contrib-type="author">
          <name-alternatives>
            <name xml:lang="ru">
              <surname>Панасенко</surname>
              <given-names>Л. М.</given-names>
            </name>
            <name xml:lang="en">
              <surname>Panasenko</surname>
              <given-names>L. M.</given-names>
            </name>
          </name-alternatives>
          <xref ref-type="aff" rid="aff-3"/>
        </contrib>
        <contrib contrib-type="author">
          <name-alternatives>
            <name xml:lang="ru">
              <surname>Суботялов</surname>
              <given-names>М. А.</given-names>
            </name>
            <name xml:lang="en">
              <surname>Subotyalov</surname>
              <given-names>M. A.</given-names>
            </name>
          </name-alternatives>
          <xref ref-type="aff" rid="aff-4"/>
        </contrib>
      </contrib-group>
      <aff id="aff-1">
        <institution content-type="orgname">Федеральное государственное бюджетное образовательное учреждение высшего образования «Новосибирский государственный педагогический университет» Министерства просвещения Российской Федерации, Новосибирск, Россия</institution>
        <institution content-type="orgname" xml:lang="en">Novosibirsk State Pedagogical University, Novosibirsk, Russia</institution>
      </aff>
      <aff id="aff-2">
        <institution content-type="orgname">ООО «Ведагенетика», Новосибирск, Россия</institution>
        <institution content-type="orgname" xml:lang="en">LLC “Vedagenetics”, Novosibirsk, Russia</institution>
      </aff>
      <aff id="aff-3">
        <institution content-type="orgname">Федеральное государственное бюджетное образовательное учреждение высшего образования «Новосибирский государственный медицинский университет» Министерства здравоохранения Российской Федерации, Новосибирск, Россия</institution>
        <institution content-type="orgname" xml:lang="en">Novosibirsk State Medical University, Novosibirsk, Russia</institution>
      </aff>
      <aff id="aff-4">
        <institution content-type="orgname">Федеральное государственное автономное образовательное учреждение высшего образования «Новосибирский национальный исследовательский государственный университет» Министерства науки и высшего образования Российской Федерации, Новосибирск, Россия</institution>
        <institution content-type="orgname" xml:lang="en">Novosibirsk State University, Novosibirsk, Russia</institution>
      </aff>
      <pub-date date-type="pub" publication-format="electronic">
        <day>27</day>
        <month>05</month>
        <year>2026</year>
      </pub-date>
      <issue seq="2">Том 12 (78)</issue>
      <issue-id>7638</issue-id>
      <fpage>3</fpage>
      <lpage>29</lpage>
      <permissions>
        <copyright-statement>Copyright (c) 2026 Ученые записки Крымского федерального университета имени В.И. Вернадского. Биология. Химия</copyright-statement>
        <copyright-year>2026</copyright-year>
        <copyright-holder>Ученые записки Крымского федерального университета имени В.И. Вернадского. Биология. Химия</copyright-holder>
      </permissions>
      <self-uri>https://sn-biolchem.cfuv.ru/article/new-test/</self-uri>
      <abstract>
        <p>Статья анализирует влияние респираторного микробиома на развитие вирусных инфекций дыхательных путей. Рассмотрены механизмы взаимодействия бактериальных сообществ с вирусами, включая иммуномодуляцию, изменение эпителиального барьера и конкуренцию за ресурсы. Показана роль дисбиоза в повышении восприимчивости к инфекциям и развитии осложнений. На примере астмы и пневмонии продемонстрирована связь между изменением состава микробиома и тяжестью заболеваний. Освещена защитная роль комменсальных бактерий (Dolosigranulum pigrum, Corynebacterium spp., Staphylococcus epidermidis), подавляющих патогены через выработку антимикробных веществ и иммуномодуляцию. Обсуждаются современные подходы к коррекции микробиома, включая применение пробиотиков, бактериальных лизатов и перспективы использования микробиомных маркеров для персонализированной терапии.</p>
      </abstract>
      <trans-abstract xml:lang="en">
        <p>This article presents a comprehensive systematic review dedicated to the critically important role of the respiratory tract microbiome in maintaining respiratory health and the development of pathological conditions. The central thesis of the work is that the respiratory microbiome is not a passive community but an active participant in immune defense, and its imbalance (dysbiosis) is a key factor in the pathogenesis of a wide spectrum of diseases. The article analyzes the complex mechanisms of interaction between commensal microorganisms and respiratory viruses. It emphasizes that a healthy microbiome serves as a powerful protective barrier through direct and indirect mechanisms: competition with pathogens for resources and receptors; activation of Toll-like receptors (TLRs) and other pattern recognition receptors; enhanced production of interferons (IFN-β, IFN-γ); synthesis of bacteriocins and fatty acids; and maintenance of epithelial barrier integrity. In contrast, dysbiosis dominated by opportunistic species not only loses these protective functions but also exacerbates the course of infections. Special attention is paid to changes in the microbiome in chronic diseases. In bronchial asthma, specific microbial signatures have been identified, characterized by a predominance of Proteobacteria (Haemophilus, Moraxella) and a reduction in protective commensals (Corynebacterium, Dolosigranulum, Lactobacillus), which directly correlates with the severity of the condition and the frequency of exacerbations. In pneumonia, the fundamental role of the oral microbiome as a reservoir for pathogens is underscored, while the paradoxical protective role of some oral commensals (Prevotella, Veillonella) in modulating the immune response is highlighted. The concluding part formulates promising directions for translational medicine: microbiome-targeted therapy using bacterial lysates and probiotics; the development of personalized diagnostic panels based on individual microbial profiles; and the implementation of whole-genome sequencing methods for a comprehensive assessment of the microbial community. The conducted analysis convincingly proves that the respiratory microbiome is an integral component of the immune system of the respiratory tract, and its targeted modulation opens revolutionary prospects for developing new strategies for the prevention, diagnosis, and treatment of respiratory diseases in the context of global rising antibiotic resistance.</p>
      </trans-abstract>
      <kwd-group xml:lang="en">
        <title>Keywords</title>
        <kwd>respiratory microbiome</kwd>
        <kwd>viral infections</kwd>
        <kwd>dysbiosis</kwd>
        <kwd>immunomodulation</kwd>
        <kwd>commensal bacteria</kwd>
        <kwd>asthma</kwd>
        <kwd>pneumonia</kwd>
        <kwd>microbiome-targeted therapy</kwd>
      </kwd-group>
      <kwd-group xml:lang="ru">
        <title>Ключевые слова</title>
        <kwd>респираторный микробиом</kwd>
        <kwd>вирусные инфекции</kwd>
        <kwd>дисбиоз</kwd>
        <kwd>иммуномодуляция</kwd>
        <kwd>комменсальные бактерии</kwd>
        <kwd>астма</kwd>
        <kwd>пневмония</kwd>
        <kwd>микробиом-таргетированная терапия</kwd>
      </kwd-group>
      <counts>
        <page-count count="27"/>
      </counts>
    </article-meta>
  </front>
  <body>
    <p>Полный текст на сайте sn-biolchem.cfuv.ru</p>
  </body>
  <back>
    <ref-list>
      <ref id="R1">
        <mixed-citation>Nesbitt H. Manipulation of the Upper Respiratory Microbiota to Reduce Incidence and Severity of Upper Respiratory Viral Infections: A Literature Review / H. Nesbitt, C. Burke, M. Haghi // Front Microbiol. – 2021. – Vol. 12. – P. 713703.</mixed-citation>
      </ref>
      <ref id="R2">
        <mixed-citation>Crestez A. M. Oral Cavity Microbiome Impact on Respiratory Infections Among Children / A. M. Crestez, A. Nechita, M. P. Daineanu [et al.] // Pediatric Health Med Ther. – 2024. – Vol. 15. – P. 311–323.</mixed-citation>
      </ref>
      <ref id="R3">
        <mixed-citation>Flynn M. The microbiome of the nasopharynx / M. Flynn, J. Dooley // J Med Microbiol. – 2021. – Vol. 70, No 6. – P. 001368.</mixed-citation>
      </ref>
      <ref id="R4">
        <mixed-citation>Pathak J. L. The role of oral microbiome in respiratory health and diseases / J. L. Pathak, Y. Yan, Q. Zhang [et al.] // Respir Med. – 2021. – Vol. 185. – P. 106475.</mixed-citation>
      </ref>
      <ref id="R5">
        <mixed-citation>Perdijk O. The microbiome: an integral player in immune homeostasis and inflammation in the respiratory tract / O. Perdijk, R. Azzoni, B. J. Marsland // Physiol Rev. – 2024. – Vol. 104, No 2. – P. 835–879.</mixed-citation>
      </ref>
      <ref id="R6">
        <mixed-citation>Losol P. The Role of Upper Airway Microbiome in the Development of Adult Asthma / P. Losol, J. P. Choi, S. H. Kim [et al.] // Immune Netw. – 2021. – Vol. 21, No 3. – P. e19.</mixed-citation>
      </ref>
      <ref id="R7">
        <mixed-citation>Valverde-Molina J. Microbiome and Asthma: Microbial Dysbiosis and the Origins, Phenotypes, Persistence, and Severity of Asthma / J. Valverde-Molina, L. García-Marcos // Nutrients. – 2023. – Vol. 15, No 3. – P. 486.</mixed-citation>
      </ref>
      <ref id="R8">
        <mixed-citation>Zhao L. The Human Respiratory Microbiome: Current Understandings and Future Directions / L. Zhao, J. L. Luo, M. K. Ali [et al.] // Am J Respir Cell Mol Biol. – 2023. – Vol. 68, No 3. – P. 245–255.</mixed-citation>
      </ref>
      <ref id="R9">
        <mixed-citation>van Beveren G. J. The respiratory microbiome in childhood asthma / G. J. van Beveren, H. Said, M. A. van Houten [et al.] // J Allergy Clin Immunol. – 2023. – Vol. 152, No 6. – P. 1352–1367.</mixed-citation>
      </ref>
      <ref id="R10">
        <mixed-citation>Losol P. Association of upper airway bacterial microbiota and asthma: systematic review / P. Losol, H. S. Park, W. J. Song [et al.] // Asia Pac Allergy. – 2022. – Vol. 12, No 3. – P. e32.</mixed-citation>
      </ref>
      <ref id="R11">
        <mixed-citation>Guo M. Y. The Role of Respiratory Flora in the Pathogenesis of Chronic Respiratory Diseases / M. Y. Guo, H. K. Chen, H. Z. Ying [et al.] // Biomed Res Int. – 2021. – Vol. 2021. – P. 6431862.</mixed-citation>
      </ref>
      <ref id="R12">
        <mixed-citation>Shah R. The airway microbiome and pediatric asthma / R. Shah, S. Bunyavanich // Curr Opin Pediatr. – 2021. – Vol. 33, No 6. – P. 639–647.</mixed-citation>
      </ref>
      <ref id="R13">
        <mixed-citation>Hilty M. Disordered microbial communities in asthmatic airways / M. Hilty, C. Burke, H. Pedro [et al.] // PLoS One. – 2010. – Vol. 5, No 1. – P. e8578.</mixed-citation>
      </ref>
      <ref id="R14">
        <mixed-citation>Peace O. Respiratory and Neurological Disease across Different Ethnic Groups Is Influenced by the Microbiome / O. Peace, K. Rachakonda, M. Kress [et al.] // Microorganisms. – 2021. – Vol. 9, No 9. – P. 1965.</mixed-citation>
      </ref>
      <ref id="R15">
        <mixed-citation>Baehren C. The Relevance of the Bacterial Microbiome, Archaeome and Mycobiome in Pediatric Asthma and Respiratory Disorders / C. Baehren, E. Buedding, A. Bellm [et al.] // Cells. – 2022. – Vol. 11, No 8. – P. 1287.</mixed-citation>
      </ref>
      <ref id="R16">
        <mixed-citation>Depner M. Bacterial microbiota of the upper respiratory tract and childhood asthma / M. Depner, M. J. Ege, M. J. Cox // J Allergy Clin Immunol. – 2017. – Vol. 139. – P. 826–834.e13.</mixed-citation>
      </ref>
      <ref id="R17">
        <mixed-citation>Dzidic M. Oral microbiota maturation during the first 7 years of life in relation to allergy development / M. Dzidic, T. R. Abrahamsson, A. Artacho // Allergy. – 2018. – Vol. 73. – P. 2000–2011.</mixed-citation>
      </ref>
      <ref id="R18">
        <mixed-citation>Hilty M. Disordered microbial communities in asthmatic airways / M. Hilty, C. Burke, H. Pedro // PLoS One. – 2010. – Vol. 5. – P. e8578.</mixed-citation>
      </ref>
      <ref id="R19">
        <mixed-citation>Chun Y. Integrative study of the upper and lower airway microbiome and transcriptome in asthma / Y. Chun, A. Do, G. Grishina // JCI Insight. – 2020. – Vol. 5. – P. e133707.</mixed-citation>
      </ref>
      <ref id="R20">
        <mixed-citation>Garaci E. Bacteria and fungi of the lung: allies or enemies? / E. Garaci, M. Pariano, E. Nunzi [et al.] // Front Pharmacol. – 2024. – Vol. 15. – P. 1497173.</mixed-citation>
      </ref>
      <ref id="R21">
        <mixed-citation>Thorsen J. Asthma and wheeze severity and the oropharyngeal microbiota in children and adolescents / J. Thorsen, J. Stokholm, M. A. Rasmussen // Ann Am Thorac Soc. – 2022. – Vol. 19. – P. 2031–2043.</mixed-citation>
      </ref>
      <ref id="R22">
        <mixed-citation>Nesbitt H. Manipulation of the Upper Respiratory Microbiota to Reduce Incidence and Severity of Upper Respiratory Viral Infections: A Literature Review / H. Nesbitt, C. Burke, M. Haghi // Front Microbiol. – 2021. – Vol. 12. – P. 713703.</mixed-citation>
      </ref>
      <ref id="R23">
        <mixed-citation>Lopes M. P. Prevotella intermedia and periodontitis are associated with severe asthma / M. P. Lopes, A. A. Cruz, M. T. Xavier // J Periodontol. – 2019. – Vol. 91. – P. 46–54.</mixed-citation>
      </ref>
      <ref id="R24">
        <mixed-citation>Shah P. D. Association between asthma and severe tooth loss in the adult population of the United States / P. D. Shah, V. M. Badner // J Asthma. – 2020. – P. 1–12.</mixed-citation>
      </ref>
      <ref id="R25">
        <mixed-citation>Li R. Lung microbiome: new insights into the pathogenesis of respiratory diseases / R. Li, J. Li, X. Zhou // Signal Transduct Target Ther. – 2024. – Vol. 9, No 1. – P. 19.</mixed-citation>
      </ref>
      <ref id="R26">
        <mixed-citation>Clark S. E. Commensal bacteria in the upper respiratory tract regulate susceptibility to infection / S. E. Clark // Curr Opin Immunol. – 2020. – Vol. 66. – P. 42–49.</mixed-citation>
      </ref>
      <ref id="R27">
        <mixed-citation>Korkmaz H. Effect of Antibiotic Exposure on Upper Respiratory Tract Bacterial Flora / H. Korkmaz, Y. Çetinkol, M. Korkmaz [et al.] // Med Sci Monit. – 2022. – Vol. 28. – P. e934931.</mixed-citation>
      </ref>
      <ref id="R28">
        <mixed-citation>Paju S. Oral biofilms, periodontitis, and pulmonary infections / S. Paju, F. A. Scannapieco // Oral Dis. – 2007. – Vol. 13. – P. 508–512.</mixed-citation>
      </ref>
      <ref id="R29">
        <mixed-citation>Scannapieco F. A. A randomized trial of chlorhexidine gluconate on oral bacterial pathogens in mechanically ventilated patients / F. A. Scannapieco, J. Yu, K. Raghavendran // Crit Care. – 2009. – Vol. 13. – P. R117.</mixed-citation>
      </ref>
      <ref id="R30">
        <mixed-citation>Jeronimo L. S. Association between periodontitis and nosocomial pneumonia: a systematic review and meta-analysis of observational studies / L. S. Jeronimo, L. G. Abreu, F. A. Cunha // Oral Health Prev Dent. – 2020. – Vol. 18. – P. 11–17.</mixed-citation>
      </ref>
      <ref id="R31">
        <mixed-citation>Iinuma T. Denture wearing during sleep doubles the risk of pneumonia in the very elderly / T. Iinuma, Y. Arai, Y. Abe // J Dent Res. – 2015. – Vol. 94. – P. 28s–36s.</mixed-citation>
      </ref>
      <ref id="R32">
        <mixed-citation>Drigot Z. G. Insights into the role of the respiratory tract microbiome in defense against bacterial pneumonia / Z. G. Drigot, S. E. Clark // Curr Opin Microbiol. – 2024. – Vol. 77. – P. 102428.</mixed-citation>
      </ref>
      <ref id="R33">
        <mixed-citation>Flynn M. The microbiome of the nasopharynx / M. Flynn, J. Dooley // J Med Microbiol. – 2021. – Vol. 70, No 6. – P. 001368.</mixed-citation>
      </ref>
      <ref id="R34">
        <mixed-citation>Verhasselt V. Antibodies in breast milk: Pro-bodies designed for healthy newborn development / V. Verhasselt, J. Tellier, R. Carsetti [et al.] // Immunol Rev. – 2024. – Vol. 328, No 1. – P. 192–204.</mixed-citation>
      </ref>
    </ref-list>
  </back>
</article>
